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Fengzhu Sun
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Identifying group-specific sequences for microbial communities using long k-mer sequence signatures
COCACOLA: binning metagenomic contigs using sequence COmposition, read CoverAge, CO-alignment and paired-end read LinkAge
Comparison of metatranscriptomic samples based on k-tuple frequencies
Integrative approaches for predicting protein function and prioritizing genes for complex phenotypes using protein interaction networks
Computational methods for the analysis of tag sequences in metagenomics studies
Modeling RNA degradation for RNA-Seq with applications
Accurate genome relative abundance estimation based on shotgun metagenomic reads
Bayesian models and Gibbs sampling strategies for local graph alignment and motif identification in stochastic biological networks
Prioritizing functional modules mediating genetic perturbations and their phenotypic effects: a global strategy
Sequence-based prioritization of nonsynonymous single-nucleotide polymorphisms for the study of disease mutations
An integrated approach to the prediction of domain-domain interactions
An integrative approach for causal gene identification and gene regulatory pathway inference
Diffusion kernel-based logistic regression models for protein function prediction
Further understanding human disease genes by comparing with housekeeping genes and other genes
Network motif identification in stochastic networks
Searching for interpretable rules for disease mutations: a simulated annealing bump hunting strategy
Assessment of the reliability of protein-protein interactions using protein localization and gene expression data
HapBlock: haplotype block partitioning and tag SNP selection software using a set of dynamic programming algorithms
Haplotype block partitioning and tag SNP selection using genotype data and their applications to association studies
Mapping gene ontology to proteins based on protein--protein interaction data
Haplotype block partition with limited resources and applications to human chromosome 21 haplotype data
A dynamic programming algorithm for haplotype block partitioning
Inferring domain-domain interactions from protein-protein interactions
Prediction of protein function using protein-protein interaction data
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