genome-seq, RNA-seq, meta-seq, disease mutation, protein functions

 

PerM

NGS Read mapping based on spaced seeds

ComB

NGS SNP calling for Illuminaand and SOLiD

PyroHMMSnp

NGS SNP calling for 454and Ion Torrent

PyroHMMvar

NGS Variant Calling for 454 and Ion Torren, short Insetion/Deletion

 

RseqFlow

NGS Work flow for RNA-seq data analysis

reCAT

NGS reconstruction of cell cycle time series from single cell RNA-seq data

 

WALT

NGS Methylation read-mapping

FadE

NGS Detection of DNA methylation

 

CROP

Unsupervised Bayesian clustering of 16s rRNA gene sequences

DACE

Clustering extremely large 16s rRNA sequencing data

GRAMMy

Estimation of  genome abundance from metagenome sequencing data

mLDM

Inference of environmental factor-microbe and microbe-microbe associations

 

SInBaD

Prediction of function of non-coding SNVs

MSRV

Prediction of disease mutation for nsSNPs

SNVForest

Prediction of disease mutations from exome sequencing data

 

KLR

Integration of heterogeneous data using diffusion kernel and logistic regression for protein function prediction